Automated Image Analysis Framework for the High-Throughput Determination of Grapevine Berry Sizes Using Conditional Random Fields

Abstract

The berry size is one of the most important fruit traits in grapevine breeding. Non-invasive, image-based phenotyping promises a fast and precise method for the monitoring of the grapevine berry size. In the present study an automated image analyzing framework was developed in order to estimate the size of grapevine berries from images in a high-throughput manner. The framework includes (i) the detection of circular structures which are potentially berries and (ii) the classification of these into the class 'berry' or 'non-berry' by utilizing a conditional random field. The approach used the concept of a one-class classification, since only the target class 'berry' is of interest and needs to be modeled. Moreover, the classification was carried out by using an automated active learning approach, i.e no user interaction is required during the classification process and in addition, the process adapts automatically to changing image conditions, e.g. illumination or berry color. The framework was tested on three datasets consisting in total of 139 images. The images were taken in an experimental vineyard at different stages of grapevine growth according to the BBCH scale. The mean berry size of a plant estimated by the framework correlates with the manually measured berry size by $0.88$.

Code and data availability

The paper describes a Matlab framework for grapevine berry size estimation and three image datasets, but no public deposit of the authors' code, images, or phenotype data is stated. The only URLs given are generic third-party tools (Matlab auto-enhancement package, Torralba/Oliva gist code) and the OIV descriptor list,

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