GridScore: a tool for accurate, cross-platform phenotypic data collection and visualization.

Abstract

BACKGROUND: Plant breeding and crop research rely on experimental phenotyping trials. These trials generate data for large numbers of traits and plant varieties that needs to be captured efficiently and accurately to support further research and downstream analysis. Traditionally scored by hand, phenotypic data is nowadays collected using spreadsheets or specialized apps. While many solutions exist, which increase efficiency and reduce errors, none offer the same familiarity as printed field plans which have been used for decades and offer an intuitive overview over the trial setup, previously recorded data and plots still requiring scoring. RESULTS: We introduce GridScore which utilizes cutting-edge web technologies to reproduce the familiarity of printed field plans while enhancing the phenotypic data collection process by adding advanced features like georeferencing, image tagging and speech recognition. GridScore is a cross-platform open-source plant phenotyping app that combines barcode-based systems with a guided data collection approach while offering a top-down view onto the data collected in a field layout. GridScore is compared to existing tools across a wide spectrum of criteria including support for barcodes, multiple platforms, and visualizations. CONCLUSION: Compared to its competition, GridScore shows strong performance across the board offering a complete manual phenotyping experience.

Code and data availability

This is a software paper describing GridScore, a phenotyping data-collection app. The authors explicitly state the source code is publicly available on GitHub and a Docker container on Docker Hub, with the project home page at ics.hutton.ac.uk. No phenotype datasets or images from the paper's exemplar trials are shared